shinymanager

Simple and secure authentication mechanism for single ‘Shiny’ applications. Credentials can be stored in an encrypted ‘SQLite’ database or on your own SQL Database (Postgres, MySQL, …). Source code of main application is protected until authentication is successful.

Live demo:

You can authenticate with:

  • user: shiny / password: shiny
  • user: shinymanager / password: shinymanager (Admin)

Online documentation : https://datastorm-open.github.io/shinymanager/

Available language

  • English
  • Français
  • Portuguese
  • Español
  • Deutsch
  • Polski
  • Japanese
  • Chinese
  • Indonesian
  • Greek

Password validity period

Using options("shinymanager.pwd_validity"), you can set password validity period. It defaults to Inf. You can specify for example options("shinymanager.pwd_validity" = 90) if you want to force user changing password each 90 days.

Failure limit

Using options("shinymanager.pwd_failure_limit"), you can set password failure limit. It defaults to Inf. You can specify for example options("shinymanager.pwd_failure_limit" = 5) if you want to lock user account after 5 wrong password.

Cross-application

Adding optional applications column in credentials db : the name of the applications to which the user is authorized, separated by a semicolon. The name of the application corresponds to the name of the directory, or can be declared using : options(“shinymanager.application” = “my-app”)

Custom password rules 

# your own rules
validate_pwd_custom <- function(pwd) {
  all(vapply(
    X = c("[0-9]+", "[a-z]+", "[A-Z]+", "[[:punct:]]+", ".{8,}"),
    FUN = grepl, x = pwd, FUN.VALUE = logical(1)
  ))
}


# server.R
server <- function(input, output, session) {
    
    auth_out <- secure_server(validate_pwd = validate_pwd_custom, ...)
    
    # your classic server logic
    
}

Relevant R documentation 

require(shinymanager)

# Init and using sqlite database
?create_db

# Init and using SQL database
?create_sql_db


# shiny integration
?secure_app
?auth_ui # ui definition


# change labels / language
 ?set_labels

News on shinymanager 1.0.500

  • (#154) add indonesian. Thanks @aswansyahputra
  • (#178) add chinese. Thanks @wtbxsjy
  • FEAT : SQL features (not only sqlite but Postgres, MySQL, …)

News on shinymanager 1.0.410

  • (#112) : fix bug changing user name. Thanks @StatisMike
  • fix DT checkbox (rm/add user)
  • Changed fab button z-index to make it appear above sidebar in shinydashboard/bs4Dash (fix #123)
  • can pass validate_pwd_ to secure_server
  • (#129) add japanese. Thanks @ironwest
  • (#113) disable download db & logs. Thanks @StatisMike
  • (#130) update somes icons. Thanks @ismirsehregal
  • add download user file
  • add options for validity pwd & update check same / old pwd
  • add options for locked account
  • (#144) Switch to Font Awesome 6 icon names. Thanks @ismirsehregal
  • (#143) add Greek language. Thanks @lefkiospaikousis

Installation

Install from CRAN with :

install.packages("shinymanager")

Or install development version from GitHub :

remotes::install_github("datastorm-open/shinymanager")

Usage

Secure your Shiny app to control who can access it :

# define some basic credentials (on data.frame)
credentials <- data.frame(
  user = c("shiny", "shinymanager"), # mandatory
  password = c("azerty", "12345"), # mandatory
  start = c("2019-04-15"), # optinal (all others)
  expire = c(NA, "2019-12-31"),
  admin = c(FALSE, TRUE),
  comment = "Simple and secure authentification mechanism 
  for single ‘Shiny’ applications.",
  stringsAsFactors = FALSE
)

library(shiny)
library(shinymanager)

ui <- fluidPage(
  tags$h2("My secure application"),
  verbatimTextOutput("auth_output")
)

# Wrap your UI with secure_app
ui <- secure_app(ui)


server <- function(input, output, session) {
  
  # call the server part
  # check_credentials returns a function to authenticate users
  res_auth <- secure_server(
    check_credentials = check_credentials(credentials)
  )
  
  output$auth_output <- renderPrint({
    reactiveValuesToList(res_auth)
  })
  
  # your classic server logic
  
}

shinyApp(ui, server)

Starting page of the application will be :

Once logged, the application will be launched and a button added to navigate between the app and the admin panel (SQL credentials only and if user is authorized to access it), and to logout from the application :

Secure Sqlite database

Store your credentials data in Sqlite database protected with a symmetric AES encryption from openssl, and password hashing using scrypt :

# Init DB using credentials data
credentials <- data.frame(
  user = c("shiny", "shinymanager"),
  password = c("azerty", "12345"),
  # password will automatically be hashed
  admin = c(FALSE, TRUE),
  stringsAsFactors = FALSE
)

# you can use keyring package to set database key
library(keyring)
key_set("R-shinymanager-key", "obiwankenobi")

# Init the database
create_db(
  credentials_data = credentials,
  sqlite_path = "path/to/database.sqlite", # will be created
  passphrase = key_get("R-shinymanager-key", "obiwankenobi")
  # passphrase = "passphrase_wihtout_keyring"
)

# Wrap your UI with secure_app, enabled admin mode or not
ui <- secure_app(ui, enable_admin = TRUE)


server <- function(input, output, session) {
  
  # check_credentials directly on sqlite db
  res_auth <- secure_server(
    check_credentials = check_credentials(
        "path/to/database.sqlite",
        passphrase = key_get("R-shinymanager-key", "obiwankenobi")
        # passphrase = "passphrase_wihtout_keyring"
    )
  )
  
  output$auth_output <- renderPrint({
    reactiveValuesToList(res_auth)
  })
  
  # your classic server logic
  ...
}

Use your own SQL database

Store your credentials data in your SQL database using the DBI interface (and always password hashing using scrypt) :

library(shiny)
library(shinymanager)

#### init the SQL Database
# first edit the .yml configuration file
system.file("sql_config/pg_template.yml", package = "shinymanager")


# Init Credentials data
credentials <- data.frame(
  user = c("shiny", "shinymanager"),
  password = c("azerty", "12345"), # password will automatically be hashed
  stringsAsFactors = FALSE
)

# Create SQL database
create_db_sql(
  credentials_data = credentials,
  config_path = "path/to/your_sql_configuration.yml"
)

### Use in shiny
ui <- fluidPage(
  tags$h2("My secure application"),
  verbatimTextOutput("auth_output")
)

# Wrap your UI with secure_app
ui <- secure_app(ui, choose_language = TRUE)


server <- function(input, output, session) {

 # call the server part
 # check_credentials returns a function to authenticate users
 res_auth <- secure_server(
   check_credentials = check_credentials(db = "path/to/your_sql_configuration.yml")
 )

 # your classic server logic

}

shinyApp(ui, server)

Admin mode

Using SQL/Sqlite database protected, an admin mode is available to manage access to the application, features included are

  • manage users account : add, modify and delete users
  • ask the user to change his password
  • see logs about application usage

Use your own function ?

You can also use your own authentification function with check_credentials, for example doiing a control to your intern database. check_credentials must be a function with two arguments user & password, returning a least with at least result (TRUE to authorize acces, or FALSE) and user_info (all you want to retrieve from the user in the app) :

require(RPostgreSQL)
library(shiny)
library(shinymanager)
library(DBI)
library(glue)

dbname = "*****"
host = "localhost"
port = *****
user = "*****"
password = "******"

con <- dbConnect(dbDriver("PostgreSQL"), dbname = dbname , host = host, port = port ,
                 user = user, password = password )


DBI::dbWriteTable(con, "my_table", data.frame(
  user = c("test"),
  password = c("123"),
  stringsAsFactors = FALSE
))

# or a config .yml file or others arguments
my_custom_check_creds <- function(dbname, host, port, db_user, db_password) {
  
 # finally one function of user and password
  function(user, password) {
    
    con <- dbConnect(dbDriver("PostgreSQL"), dbname = dbname, 
                     host = host, port = port,
                     user = db_user, password = db_password)
    
    on.exit(dbDisconnect(con))
    
    req <- glue_sql("SELECT * FROM my_table WHERE \"user\" = ({user}) AND \"password\" = ({password})", 
             user = user, password = password, .con = con
    )
    
    req <- dbSendQuery(con, req)
    res <- dbFetch(req)
    if (nrow(res) > 0) {
      list(result = TRUE, user_info = list(user = user, something = 123))
    } else {
      list(result = FALSE)
    }
  }
}

ui <- fluidPage(
  tags$h2("My secure application"),
  verbatimTextOutput("auth_output")
)
ui <- secure_app(ui)


server <- function(input, output, session) {
  res_auth <- secure_server(
    check_credentials = my_custom_check_creds(
      dbname = "******",
      host = "*****",
      port = ****,
      db_user = "*****",
      db_password = "*******"
    )
  )  
  auth_output <- reactive({
    reactiveValuesToList(res_auth)
  })
  
  # access info
  observe({
    print(auth_output())
  })
}

shinyApp(ui, server)

shiny input

Two inputs are created :

observe({
    print(input$shinymanager_where)
    print(input$shinymanager_language)
})

Customization

You can customize the module (css, image, language, …).

?secure_app
?auth_ui
?set_labels

Flexdasboard

It’s possible to use shinymanager authentification on flexdashboard (but not admin console at moment). You can find information on this discussion. But it’s not a really secure way because user can overpass the authentification using developper console… Prefer use shiny application with secure_app function.

shinyapps.io

There’s no persistent data storage on shinyapps.io, you can read more here : https://docs.rstudio.com/shinyapps.io/Storage.html. So your sqlite database is lost when the instance is closed, and the one you’ve pushed when deploying the application will be used. You have to use external database.

Troubleshooting

The application works fine without shinymanager but not you have trouble using shinymanager.

There is a lag between your ui and the server, since shinymanger hides the ui part until authentication is successful. It is therefore possible that some of `ui element`` (input) are not defined and are NULL. In this case, you’ll see some warning / error message in your R console.

So we recommend to use in all your reactive/observer functions the req instruction to validate the inputs.

One more global and brutal solution can be :

server <- function(input, output, session) {
  
  auth_out <- secure_server(....)
  
  observe({
    if(is.null(input$shinymanager_where) || (!is.null(input$shinymanager_where) && input$shinymanager_where %in% "application")){
      
      # your server app code
    }
  })
}

But it’s better to use req solution. More discussion on https://github.com/datastorm-open/shinymanager/issues/36

HTTP request

shinymanager use http request and sha256 tokens to grant access to the application, like this the source code is protected without having the need to change your UI or server code.

About security

The credentials database is secured with a pass phrase and the openssl package. Hashed password using scrypt. If you have concern about method we use, please fill an issue.

Package shinyauthr provides a nice shiny module to add an authentication layer to your shiny apps.